Eric Leung

:computer: Curated list of awesome resources and links about using NoSQL databases

:earth_americas: Readings and resource materials for data science

:movie_camera: R data package to explore Pixar films, the people, and reception data

:wrench: A repository of my dotfiles to setup my development environments

:closed_book: Unofficial Journal of American Medical Informatics Association (JAMIA) Markdown Journal Article Template

RStudio addin to style Python code blocks with black

:notebook: Minimal cheatsheet for functions in the phyloseq R package

:hourglass_flowing_sand: RStudio Addin to quickly and roughly convert nested ifelse() statements to dplyr::case_when()

:notebook: Today I learned tips and programming notes I find useful for me

:computer: Repository for teaching materials and notes on machine learning and data science for freeCodeCamp

:milky_way: Presentation on the tidyverse in R to clean and manipulate data

Interactive application to explore various ecological diversity metrics

Book club notes for reading through McElreath's book Statistical Rethinking

:clipboard: Miscellaneous templates of common documents and files I find myself reusing

:bar_chart: My custom LaTeX beamer theme for presentations

The http://FreeCodeCamp.com open-source codebase and curriculum. Learn to code and help nonprofits.

:stars: Parsing and basic network analysis of fusion genes from the Catalogue of Somatic Mutations in Cancer (COSMIC) database

:microscope: Resources and notes on studying the human microbiome

:ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

:memo: Source code for my website, portfolio of projects, and more

:wine_glass: CS559/659 Machine Learning Final Project on Predicting Wine Quality

:movie_camera: Twitter analysis of Disney+'s announcement for the TV series and movies they will stream

:game_die: Python package, notes, and scripts on mathematical statistics, statistical methods, and probability

:book: Experiment with various machine learning algorithms on various data sets from the University of California, Irvine (UCI) Machine Learning Repository (http://archive.ics.uci.edu/ml/index.html)

Cookbook for recipes to do network analysis and visualization using tidygraph and ggraph

Resources on marketing mix modeling, implementations, and guides

Random Scikit-learn Guide Generator

This repository is an archive of emails that are sent by the awesome Quincy Larson every week.

:musical_keyboard: Tutorial, resources, and notes on the text editor Vim

:traffic_light: Programming Solutions to Bioinformatic Rosalind Problems

No description.

:headphones: Papers discussed on various shows on MicrobeTV

:beginner: Code to help clean and format the 2017 New Coder Survey by freeCodeCamp

Bayesian marketing toolbox in PyMC. Media Mix (MMM), customer lifetime value (CLV), buy-till-you-die (BTYD) models and more.

Self-study and book club resources to read Mostly Harmless Econometrics

Course materials to teach DATA 631

🌸 Data for cherry blossom status at the Brooklyn Botanic Garden

An Emacs web feeds client

Web application to explore trends of the Brooklyn Botanic Garden's cherry blossoms

Dashboard for the cherry blossoms at the Brooklyn Botanic Gardens

Python code to explore and take notes on probability and statistics

🪨 Share contact links with a group instantly — no accounts, no app install, no pairwise sending

Analysis of Brooklyn Botanic Gardens' and the blooming cycle of the cherry blossoms

Randomly match colleagues or people in a group

An API to serve requests for announcements, articles, and facts listed in Wikipedia's "Did you know.."

Explore time series of Wikipedia articles and forecast readership

An API to pull data about Pixar films from the {pixarfilms} R package

Python tools to help semi-automate updating Wikipedia infoboxes

Minimal project that uses MLOps technologies, like Airflow, MLflow, CI/CD, DVC, etc

:memo: Profile README

Bayesian Modeling and Probabilistic Programming in Python

:art: Visualizing art

Pipeable steps for feature engineering and data preprocessing to prepare for modeling

Intro to Testing and Test Automation in Python

Working with relational data models in R

Materials for rstudio::conf

:snowflake: My solutions for the Advent of Code

My presentation and distillation of the Attention is All We Need article from Google

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

No description.

🔭 R color palette inspired by the images from the JWST

A guide to contributing to open source

Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

LightweightMMM 🦇 is a lightweight Bayesian Marketing Mix Modeling (MMM) library that allows users to easily train MMMs and obtain channel attribution information.

Source code for the Online-Go.com web interface

A curated list of awesome posts, videos, and articles on leading a data team (small and large)

R Weekly

A collection of materials relating to technical writing

Classes and functions to create and summarize resampling objects

Analyze and get feedback of figure skating moves using Python and OpenCV

:office: Code and notes on running various database management systems

Filters and Shaders for 'ggplot2'

CmdStanR: the R interface to CmdStan

Eric Leung's GitHub settings

No description.

A data visualization of my job search in 2021

The 2i2c website

Raise error for whitespace in folders

Raise error for whitespace in files

Deliberate Practice for Learning Emacs Lisp

:seedling: My digital garden

Try Catch Stack overflow (TcSo) Is a collection of Try statements in all the programming languages under the globe which catches the exception and searches for the cause of the caught exception in the stack overflow automatically.

Read flat files (csv, tsv, fwf) into R

No description.

microbiome R package

The biggest collection of R books (and maybe later some other resources too)

Pipe a function into help()

:chart_with_upwards_trend: My attempts at #tidytuesday

This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

Presentation on R, tidy data, and useful functions

R package RefManageR

Combinatorial Polyfunctionality Analysis of Single Cells

A GatingML Interface for Cross Platform Cytometry Data Sharing

:basketball: Analysis of sports popularity in the USA

Building R packages

📜 Discover and install useful RStudio addins

:crystal_ball: Generate synthetic phyloseq objects for code testing and data sharing

ggplot2: elegant graphics for data analysis

Host repository for The Turing Way: a how to guide for reproducible data science

Official repo for the #tidytuesday project

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Easily tidy data with spread and gather functions.

An implementation of the Grammar of Graphics in R

:beginner: Code to wrangle data from the 2018 New Coder Survey by freeCodeCamp

:speaker: Twitter analysis of #NLMITC19

Hugo testing website

No description.

:fishing_pole_and_fish: Quick Shiny application to help triage multiple samples from subjects

:grapes: Human immune system abstracted using Python and object-oriented programming

R package to create "Table 1", description of baseline characteristics with or without propensity score weighting

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

Beautiful static documentation for your API

Documentation for RStudio Addins

:outbox_tray: Python script to help automate bulk upload of graded Jupyter notebook assignments

A Zettelkasten system! Or rather, some functions on top of the emacs deft package.

scikit-learn: machine learning in Python

The user manual for the drake R package

Accurate sample inference from amplicon data with single nucleotide resolution

Brief overview of GitHub and Git

A frictionless, pipeable approach to dealing with summary statistics

The Public Utility Data Liberation Project

Updated tutorial on using exacloud and slurm. Start here: https://laderast.github.io/exacloud_tutorial

Explore Jeopardy log of questions, answers, and dates they were used

Materials for writing a dissertation at Oregon Health & Science University in R Markdown

Build blazing fast, modern apps and websites with React

Presentation on Python's unittest and Travis CI

DataCamp Introduction to the Tidyverse. Available at https://www.datacamp.com/courses/rbootcamp

Teaching Tech Together

JavaScript versus Data Science

Utilities for building and managing bioconda recipes

The results of the 2018 New Coder Survey

Data Science at the Command Line

Set up commonly used 📦 components

Final project for BMI 656 Bioinformatics Programming and Scripting

Lecture material for teaching Python's NetworkX package and Bash scripting

Reading for gender bias

Community Documentation for the Carpentries

Interactive lessons in bioinformatics.

UNIX-style utilities for FASTA exploration

:recycle: Python library to experiment with Linear Algebra concepts (work in progress)

:crystal_ball: A place to keep track of my presentations

:zap: Learn concepts from Nature Methods' series "Points of Significance"

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

Utility functions I find useful

:chains: Teaching material on Markov processes

:fishing_pole_and_fish: Teaching material on Bayesian networks

List of computational resources for analyzing microbial sequencing data.

Streamable FASTQ parser

Streamable FASTA parser.

Vim plugin script to color words that are not simple like in http://xkcd.com/simplewriter/

:musical_score: Tutorial to the typesetting application LaTeX

:pencil: Tutorial on using Sweave and knitr with R and RStudio for reproducible research

freeCodeCamp's static about page

📚 Free and non free books all can learn from

A collection of guides to various tools

Hikes development

freeCodeCamp's stand-alone Python coding challenges

:notebook: Coursework for miscellaneous programming, web development, etc courses

Open Dataset from freeCodeCamp's 2017 survey of more than 20,000 developers

Commitizen adapter for freeCodeCamp.

:triangular_ruler: Scripts to Solve Project Euler Problems

Welcome to OHSU Code Club!

Papers from the computer science community to read and discuss.

:seedling: a curated list of tools to help you with the research/life

:snake: Test Python module to get familiar with creation and maintenance of a Python module

Curated list of resources for Biology.

Draft Tutorial for self directed bootcamp for learning R-programming basics.

To create and test non-JS challenges for freecodecamp https://freecodecamp.com

:city_sunrise: A collection of links for free stock photography, video and Illustration websites.

Echo skill that calculates a users cardiovascular risk score

:fuelpump: Analysis of my driving records for several years

A module to teach you how to module.

A curated list of awesome mathematics resources

A curated list of awesome lists

Free Code Camp's wiki articles

A list of CLI workshopper/adventure tutorials for various things. Inspired by awesome.

Curated list of inspiring and thoughtful answers given at stackoverflow, quora, etc.

A curated list of awesome Bioinformatics libraries and software.

Using BOSC2015 unconference sessions on building successful open source bioinformatics communities to write an open collaborative article

Convert various delimited text files to LaTeX tables

An example that will cause a build failure

Network analyses on 127 significantly mutated genes from well-known and emerging cellular processes in cancer using Python and Shell scripting.

Style guides for Google-originated open-source projects