24-day current streak·26-day longest streak
Hello there 👋 My name is Abhinav Sharma, I am a Data Scientist who enjoys working with Bioinformatics. I enjoy helping people and simplifying their life using programming. My history…
Hello there 👋
My name is Abhinav Sharma, I am a Data Scientist who enjoys working with Bioinformatics. I enjoy helping people and simplifying their life using programming. My history with StartUps gave me experience with Computational Workflows on Cloud/HPC, DevOps, QA and SAAS product development.
💖 I love Clojure, Powershell - and functional programming in general
<!-- - 🔭 I’m currently working on top secret stuff! - but check out my previous work on my resume -->
<!-- - 🌱 I’m currently learning Svelte -->
<!-- - 👯 I’m looking to collaborate on game-data visualisation (frontend) -->
<!-- - 💬 Ask me about backend systems, data pipelines & eSports - or anything else, really! -->
<!-- - 📫 How to reach me: [[email protected]](mailto:[email protected]) -->
Some of my favourite tools
Highlights
Here's brief list of my public or open source work, containing the PRs and initiatives which I consider to be noteworthy as of mid-2020.Scientific collaborations, DataScience - AI - ML, CLI tools, ReactJS ecosystem and Misc
-
nf-nomad ★ PINNED ⑂
[WIP] Hashicorp Nomad executor plugin for Nextflow
Groovy ★ 0 2y agoExplain → -
abhi18av.com ★ PINNED
My personal website and blog
Python ★ 1 1mo agoExplain → -
awesome-pdf
List of tools for dealing with the wonderful PDF format.
★ 54 3mo agoExplain → -
Alda-VsCode
Syntax highlighting for Alda - a music programming language.
★ 12 4y agoExplain → -
Chez-Scheme-VsCode
VsCode extension for the Chez Scheme programming language
TypeScript ★ 7 6y agoExplain → -
awesome-hy
Clojure-esqe Python library wrappers
★ 5 9y agoExplain → -
rrb-trees-medium-blog
Exploring the RRB-Trees in Clojure
Clojure ★ 3 7y agoExplain → -
drug-resistance-prediction-cambiohack ▣
Predicting drug resistance using H20.ai
Jupyter Notebook ★ 3 5y agoExplain → -
auto-apply-coursera
A Clojure program to automatically apply for Course scholarships
Clojure ★ 2 7y agoExplain → -
CertificationsAndCourses
This repo is home to all the certifications I've completed till date.
★ 2 5y agoExplain → -
parallel-tbprofiler-conda-test-nf
No description.
Nextflow ★ 2 2y agoExplain → -
nextflow ⑂
A DSL for data-driven computational pipelines
Groovy ★ 2 2y agoExplain → -
hello-clojurescript.core
No description.
Clojure ★ 2 6y agoExplain → -
minimal-fulcro-app
The walkthrough of a minimal fulcro app
Clojure ★ 2 6y agoExplain → -
LSTM-Text-Generation
Tons of fun with text and recurrent neural networks!
Hy ★ 1 9y agoExplain → -
projectable ⑂
:dizzy: A TUI file manager built for projects
★ 1 1y agoExplain → -
emilyncosta.com ⑂
My Blog and CV
JavaScript ★ 1 1y agoExplain → -
Nextflow-BioWiki ⑂
This repository compiles the documentation of the Theme Collaboration Award (2023) from Telethon Kids Institute
★ 1 1y agoExplain → -
nf-sleep ⑂
No description.
Nextflow ★ 1 2y agoExplain → -
awesome-estonia
An essential list of resources for digital nomads
★ 1 7y agoExplain → -
nf-tower-docusaurus
No description.
JavaScript ★ 1 4y agoExplain → -
nextflow-vim ⑂
Nextflow plugin for VIM
★ 1 3y agoExplain → -
bacannot ⑂
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
Nextflow ★ 1 4y agoExplain → -
bionitio-clojure ⑂
Demonstrating best practices for bioinformatics command line tools
Clojure ★ 1 4y agoExplain → -
nf-tower-docs-orgs-and-teams
No description.
HTML ★ 1 4y agoExplain → -
modules ⑂
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow ★ 1 4y agoExplain → -
rnaseq-nf ⑂
A proof of concept of RNAseq pipeline
Nextflow ★ 1 4y agoExplain → -
h3agwas ⑂
GWAS Pipeline for H3Africa
★ 1 4y agoExplain → -
abhi18av
No description.
★ 1 3y agoExplain → -
clojure-deps-edn ⑂
User level aliases and Clojure CLI configuration for deps.edn based projects
★ 1 4y agoExplain → -
multi-package-containers ⑂
Testing building mulled containers for multi-requirement tools.
★ 1 4y agoExplain → -
nf-core-tower-azure-poc ⑂
No description.
Shell ★ 1 3y agoExplain → -
nf-biojava ⑂
a nextflow plugin to integrate BioJava
Java ★ 1 3y agoExplain → -
blog-en ⑂
My quarto blog (thanks to Bea Milz!)
HTML ★ 1 3y agoExplain → -
MTBseq_source ⑂
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
★ 1 3y agoExplain → -
coursera-julia-scientific-programming
No description.
Jupyter Notebook ★ 1 9y agoExplain → -
nextflow-datascience-titanic-survival-analysis
No description.
Jupyter Notebook ★ 1 5y agoExplain → -
nextflow_grid_search
No description.
Nextflow ★ 1 5y agoExplain → -
LJMU_Masters_Dissertation
No description.
Jupyter Notebook ★ 1 5y agoExplain → -
miniMAL ⑂
A Delightfully Diminutive Lisp. Implemented in < 1 KB of JavaScript with JSON source, macros, tail-calls, JS interop, error-handling, and more.
JavaScript ★ 1 9y agoExplain → -
nf-training ⑂
Training material for https://carpentries-incubator.github.io/workflows-nextflow/
★ 1 5y agoExplain → -
nextflow-module-pattern
No description.
Nextflow ★ 1 5y agoExplain → -
hello_nf
No description.
Nextflow ★ 1 5y agoExplain → -
git-readme ⑂
An opinionated collection of Git one-liners
★ 1 5y agoExplain → -
fulcro-pathom-realworld-example-app ⑂
Starter kit for new RealWorld framework implementations
★ 1 6y agoExplain → -
clojure-browser-automation
No description.
Clojure ★ 1 6y agoExplain → -
innovation-competition
Submission for a programming challenge
HTML ★ 1 6y agoExplain → -
luminus-snake
A snake game in ClojureScript and Lumo
JavaScript ★ 1 7y agoExplain → -
alda-musician
No description.
Clojure ★ 1 7y agoExplain → -
apaquarto ⑂
A quarto extension for creating APA7 documents in .docx, .html, and .pdf formats
Lua ★ 0 1mo agoExplain → -
realworld ⑂
"The mother of all demo apps" — Exemplary fullstack Medium.com clone powered by React, Angular, Node, Django, and many more 🏅
★ 0 8y agoExplain → -
aind-recognizer
No description.
Jupyter Notebook ★ 0 8y agoExplain → -
Awesome-MOOC ⑂
List of free online programming/CS courses [Massive Open Online Courses]
★ 0 9y agoExplain → -
readsimulator ⑂
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
★ 0 1y agoExplain → -
el-restish
No description.
Emacs Lisp ★ 0 8mo agoExplain → -
el-supernotes
A simple emacs-lisp wrapper for Supernotes API https://developer.supernotes.app/api-reference/introduction
Emacs Lisp ★ 0 8mo agoExplain → -
nf-aspera ⑂
a Nextflow plugin for Aspera file transfer
★ 0 10mo agoExplain → -
proj-collab-jnn-xdr
No description.
Python ★ 0 10mo agoExplain → -
cyberdux_duckguin ⑂
No description.
CSS ★ 0 1y agoExplain → -
typst-tablem ⑂
Write markdown-like tables easily.
Typst ★ 0 1y agoExplain → -
nf-cachebrowser ⑂
A Nextflow plugin that provides a web-based interface for visualizing and exploring Nextflow pipeline executions directly in your browser.
Groovy ★ 0 1y agoExplain → -
cloel ⑂
Cloel is a framework that combines Clojure and Elisp for collaborative programming
Emacs Lisp ★ 0 1y agoExplain → -
nf-core-website ⑂
Code and files for the main nf-core website.
MDX ★ 0 1y agoExplain → -
BACTpipe ⑂
BACTpipe: An assembly and annotation pipeline for bacterial genomics
★ 0 5y agoExplain → -
twrgo
Golang client for the Nextflow tower API
Go ★ 0 5y agoExplain → -
fetchngs ⑂
Pipeline to fetch metadata and raw FastQ files from public and private databases
Groovy ★ 0 3y agoExplain → -
pathogen-profiler ⑂
This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data
★ 0 2y agoExplain → -
TBProfiler ⑂
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
★ 0 2y agoExplain → -
nf-plugin-sdk ⑂
No description.
★ 0 2y agoExplain → -
nf-datomic
No description.
★ 0 2y agoExplain → -
nf-plugins ⑂
Nextflow plugins index repository
★ 0 2y agoExplain → -
mlai ⑂
Notes on machine learning and artificial intelligence.
HTML ★ 0 8y agoExplain → -
wave ⑂
On-demand containers provisioning service
★ 0 2y agoExplain → -
youtrack-rest-python-library ⑂
Python library for interacting with YouTrack via REST API
Python ★ 0 7y agoExplain → -
awesome-stars ⑂
A curated list of my GitHub stars!
★ 0 3y agoExplain → -
methylseq ⑂
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
★ 0 3y agoExplain → -
samplesheetgen-clj
A Babashka (Clojure) utility for generating samplesheets for different platforms from a base samplesheet
Clojure ★ 0 3y agoExplain → -
staged-recipes ⑂
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
★ 0 3y agoExplain → -
clj-py-r-template ⑂
No description.
★ 0 4y agoExplain → -
nf-core-and-azure-setup
No description.
★ 0 3y agoExplain → -
pyMTC_forked ▣
No description.
Python ★ 0 6y agoExplain → -
eklavya-browser ▣
No description.
Clojure ★ 0 8y agoExplain → -
ena-genomes-link-aggregator
No description.
Python ★ 0 5y agoExplain → -
hello-kubernetes-nf
No description.
Nextflow ★ 0 4y agoExplain → -
bactopia.github.io ⑂
Bactopia Documentation
★ 0 4y agoExplain → -
gentb-nf
The Nextflow version of https://github.com/farhat-lab/gentb-snakemake
★ 0 4y agoExplain → -
bioconda-recipes ⑂
Conda recipes for the bioconda channel.
★ 0 4y agoExplain → -
4clojure-solutions-archive ⑂
Anonymised solutions archive of 4clojure.com
★ 0 5y agoExplain → -
openfaas-clojure-template ⑂
An OpenFaaS template for writing functions in Clojure
★ 0 5y agoExplain → -
sarek ⑂
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow ★ 0 5y agoExplain → -
erpnext-docker-debian ⑂
:whale: Self-contained ERPNext Docker Image base on Debian
★ 0 5y agoExplain → -
nf-tower-k8s ⑂
No description.
★ 0 5y agoExplain → -
why_cryptocurrencies ⑂
Source for the book "Why Cryptocurrencies?"
Perl ★ 0 5y agoExplain → -
bactmap ⑂
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
★ 0 5y agoExplain → -
nf-snippets ⑂
my simple nf snippets
★ 0 5y agoExplain → -
nf-sicilian ⑂
No description.
★ 0 5y agoExplain → -
rules_elisp ⑂
Bazel rules for Emacs Lisp
Starlark ★ 0 5y agoExplain → -
emacs ⑂
Go bindings for Emacs module API
★ 0 5y agoExplain → -
emacs-module-go ⑂
No description.
★ 0 6y agoExplain → -
ppx_string ⑂
ppx extension for string interpolation
★ 0 5y agoExplain → -
ppx_sexp_message ⑂
A ppx rewriter for easy construction of s-expressions
★ 0 5y agoExplain → -
reference ⑂
Share quick reference cheat sheet for developers.
★ 0 5y agoExplain → -
pathom-connect-youtube ⑂
No description.
★ 0 5y agoExplain → -
emacs-currency-convert ⑂
Currency converter in Emacs
Emacs Lisp ★ 0 5y agoExplain → -
nextflow-bug-report ⑂
Tiny repository to demonstrate a potential bug in nextflow
★ 0 5y agoExplain → -
Native-FSharp-Library ⑂
Create a DLL in F# that can be called by native C++
★ 0 6y agoExplain → -
emacs-ctable ⑂
Table Component for elisp
★ 0 5y agoExplain → -
emacs-package-dev-handbook ⑂
An Emacs package development handbook. Built with Emacs, by Emacs package developers, for Emacs package developers.
★ 0 5y agoExplain → -
crisprbuilder_tb_new
Helps collect and annotate Mycobacterium tuberculosis whole genome sequencing data for CRISPR investigation.
Python ★ 0 5y agoExplain → -
emacs.d ⑂
My personal Emacs configuration
★ 0 5y agoExplain → -
Clojuratica12 ⑂
An interface between Clojure and Mathematica
★ 0 6y agoExplain → -
ant-design ⑂
🐜 A UI Design Language
TypeScript ★ 0 9y agoExplain → -
gwas ⑂
A pipeline for Genome Wide Association Studies
★ 0 5y agoExplain → -
mysql ⑂
Go MySQL Driver is a MySQL driver for Go's (golang) database/sql package
★ 0 5y agoExplain → -
nextflow-study-notes ⑂
No description.
★ 0 5y agoExplain → -
twr
A cross-platform CLI for interacting with Tower.nf
Go ★ 0 5y agoExplain → -
GWAS-pipeline ⑂
From QC to summary statistics
★ 0 6y agoExplain → -
NextflowWorkbench ⑂
An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the Nextflow.io middleware. Includes dockerfile language and IDE-like support for docker.
★ 0 10y agoExplain → -
cljfx ⑂
Declarative, functional and extensible wrapper of JavaFX inspired by better parts of react and re-frame
★ 0 5y agoExplain → -
Genotype_Imputation_Pipeline ⑂
Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.
★ 0 5y agoExplain → -
deepvariant ⑂
Google's DeepVariant variant caller as a Nextflow pipeline
Nextflow ★ 0 5y agoExplain → -
deepvariant_test
No description.
Nextflow ★ 0 5y agoExplain → -
AdventOfCode2020 ⑂
It's that time of the year again! My Advent of Code solutions in F#
★ 0 5y agoExplain → -
cookiecutter-nextflow-data-science
No description.
Python ★ 0 5y agoExplain → -
nf-ignite ⑂
No description.
★ 0 5y agoExplain → -
nextflow_composable_configurations
No description.
Nextflow ★ 0 5y agoExplain → -
bioinformatics ⑂
:microscope: Path to a free self-taught education in Bioinformatics!
★ 0 5y agoExplain → -
Risk_Stratification
No description.
Jupyter Notebook ★ 0 6y agoExplain → -
localstack-blog-series
No description.
JavaScript ★ 0 6y agoExplain → -
telecom_churn
No description.
Makefile ★ 0 6y agoExplain → -
Healthcare_Capstone
No description.
HTML ★ 0 6y agoExplain → -
fraud_detection
No description.
Jupyter Notebook ★ 0 6y agoExplain → -
oraclelinux_singularity
No description.
★ 0 6y agoExplain → -
nextjs-preact-demo ⑂
Next.js 9.3 + Preact = 21kB
★ 0 6y agoExplain → -
figwheel_cljs
No description.
Clojure ★ 0 6y agoExplain → -
RDSharma
Mathematiker
Mathematica ★ 0 8y agoExplain → -
ideabox
No description.
★ 0 8y agoExplain → -
fastq2matrix ⑂
No description.
★ 0 6y agoExplain → -
git-flow-playground
No description.
★ 0 6y agoExplain → -
github-email_docker
https://hub.docker.com/repository/docker/abhi18av/github-email/general
Dockerfile ★ 0 6y agoExplain → -
powershell-one-liners ⑂
No description.
★ 0 6y agoExplain → -
ocaml-rs ⑂
OCaml extensions in Rust
★ 0 6y agoExplain → -
workspaces ⑂
Live development environment for Clojurescript
★ 0 6y agoExplain → -
ecaml ⑂
Writing Emacs plugin in OCaml
★ 0 6y agoExplain → -
ecaml-hello ⑂
An example Ecaml plugin
★ 0 6y agoExplain → -
doom-emacs-literate-config ⑂
My literate configuration for doom-emacs
★ 0 7y agoExplain → -
ecaml-bf ⑂
A brainfuck interpreter in OCaml, on Emacs
★ 0 8y agoExplain → -
docker-emacs ⑂
Dockerized Emacs (GUI)
★ 0 6y agoExplain → -
emacs-imagemagick ⑂
ImageMagick++ binding of Emacs Lisp
★ 0 6y agoExplain → -
My_Articles ⑂
Add articles on the technical tools
★ 0 6y agoExplain → -
clojure-trie-performance ⑂
No description.
★ 0 8y agoExplain → -
fulcro-frontend-template
A tempate for pure frontend apps using Fulcro
Clojure ★ 0 6y agoExplain → -
acm-icpc-problems-aggregator
No description.
Clojure ★ 0 6y agoExplain → -
fetch-acm-icpc-problem
No description.
JavaScript ★ 0 6y agoExplain → -
The-Competitive-Schemer-VsCode
No description.
TypeScript ★ 0 6y agoExplain → -
closerIQ_algo_round
No description.
Python ★ 0 6y agoExplain → -
ask_rosetta
No description.
Python ★ 0 6y agoExplain → -
pyMTC ⑂
Collect and annotate Mycobacterium tuberculosis WGS data for CRISPR investigations
★ 0 6y agoExplain → -
fulcro3-deduplication
Identifies the possible duplicate defns in fulcro3 codebase
Clojure ★ 0 6y agoExplain → -
Batsh ⑂
A language that compiles to Bash and Windows Batch
OCaml ★ 0 9y agoExplain → -
awesome-rails ⑂
A collection / list of awesome projects, sites made with Rails.
★ 0 9y agoExplain → -
sabedoria-api
No description.
JavaScript ★ 0 6y agoExplain → -
newsreader ⑂
Building a newsreader using the HackerNews Api, React, React Testing Library, Styled Components, Axios & Memo
★ 0 6y agoExplain → -
requisitos-habitica ⑂
Projeto na área de Engenharia de Requisitos que visa realizar engenharia reversa da aplicação Habitica. Links para os artefatos: https://requisitos-habitica.netlify.com/ e
JavaScript ★ 0 6y agoExplain → -
cookiecutter-nextflow
No description.
Nextflow ★ 0 6y agoExplain → -
batch-8-NuSlack ⑂
A Group-chat application
★ 0 7y agoExplain → -
fulcro ⑂
A library for development of single-page full-stack web applications in clj/cljs
Clojure ★ 0 5y agoExplain → -
statecharts.github.io ⑂
There is no state but what we make. Feel free to pitch in.
★ 0 6y agoExplain → -
blog_robinwieruch_content ⑂
✏️ Content of robinwieruch.de - Write guest blog posts or improve the content. Your help means a lot to me.
★ 0 6y agoExplain → -
spa-without-ui-fulcro
Master UI with pure data
Clojure ★ 0 5y agoExplain → -
fulcro-project-scratchpad
No description.
Clojure ★ 0 6y agoExplain → -
simple-clicker-fulcro
No description.
Clojure ★ 0 6y agoExplain → -
fulcro3-yt-videos
Practicing along with the official Fulcro3 videos
Clojure ★ 0 6y agoExplain → -
fulcro-nodejs-ssr-example ⑂
No description.
Clojure ★ 0 7y agoExplain → -
file-upload-demo ⑂
A Demo of File Upload via devcards and Fulcro
Clojure ★ 0 8y agoExplain → -
FulcroExamplesAsciidoc
An extension for Asciidoctor preprocessor
Clojure ★ 0 6y agoExplain → -
clojure-days-clojure-graph-presentation ⑂
No description.
Clojure ★ 0 8y agoExplain → -
fulcro-todomvc ⑂
An implementation of the TodoMVC app in Fulcro. Full Stack and Internationalized with a support DVR!
Clojure ★ 0 7y agoExplain → -
awesome-remote-job ⑂
A curated list of awesome remote jobs and resources. Inspired by https://github.com/vinta/awesome-python
★ 0 7y agoExplain → -
pathom ⑂
Pathom is a Clojure(script) engine for parsing EQL queries.
Clojure ★ 0 6y agoExplain → -
spotify-pathom ⑂
Source code for tutorial on pathom spotify
Clojure ★ 0 8y agoExplain → -
fulcro-developer-guide ⑂
Fulcro 3 Developer's Guide. (See root of older fulcro repository for version 2)
HTML ★ 0 6y agoExplain → -
OfficeBot
No description.
★ 0 8y agoExplain → -
dotfiles-fork ⑂
My .emacs, .screenrc, etc.
Emacs Lisp ★ 0 8y agoExplain → -
react-calculator ⑂
No description.
JavaScript ★ 0 6y agoExplain → -
react-form-unit-test-example ⑂
Example of unit testing React form with Jest and Enzyme
JavaScript ★ 0 7y agoExplain → -
hacker-laws ⑂
💻📖 Laws, Theories, Principles and Patterns that developers will find useful. #hackerlaws
★ 0 7y agoExplain → -
cljs-tui-template ⑂
A leiningen template to generate ClojureScript Terminal-User-Interface applications built on web technologies you already know.
Clojure ★ 0 7y agoExplain → -
faker-rest-api-server
No description.
Clojure ★ 0 7y agoExplain → -
cheffy-airbnb-for-chefs
No description.
Clojure ★ 0 7y agoExplain → -
creditsEDACaseStudy
No description.
Jupyter Notebook ★ 0 7y agoExplain → -
planck ⑂
Stand-alone ClojureScript REPL
C ★ 0 7y agoExplain → -
hara ⑂
code design patterns
Clojure ★ 0 7y agoExplain → -
hara-old ⑂
code patterns and utilities
Clojure ★ 0 9y agoExplain → -
cookiecutter_abhi18av
No description.
Python ★ 0 7y agoExplain → -
kaali
Vagrant Box for mastering Ethical Hacking
★ 0 7y agoExplain → -
TheCodeOfKhans
No description.
C# ★ 0 8y agoExplain → -
alura-dl
No description.
★ 0 7y agoExplain → -
og-aws ⑂
📙 Amazon Web Services — a practical guide
Shell ★ 0 7y agoExplain → -
go-interlang ⑂
Examples of calls between Go and C/C++ (and how to call a Go shared object from Node/Ruby/Python/Java)
Go ★ 0 9y agoExplain →
No repos match these filters.