Demetris Roumis Claim this profile

Just type `aca` to activate your env name specified in your environment.yml

No description.

Neural Spike Train Analysis Toolbox for Matlab

A CLI tool to auto min pin dependencies in conda YAML files

Neurophysiological Analysis

NMA project

No description.

A repo containing a description of the various data types files used in Loren Frank's lab

Python reimplementation of CBAS (Choice-Wide Behavioral Association Study)

miniscope analysis pipeline with interactive visualizations

WebGL-based viewer for volumetric data

Render DataFrames as interactive tables in a notebook

HoloViz+Bokeh for Neuroscience

A systematic approach to creating better documentation.

A conda-smithy repository for colorcet.

A generative AI extension for JupyterLab

A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and disease"

Interactive Data Visualization in the browser, from Python

A conda-smithy repository for minian.

Which environments have <package> installed?

No description.

Tools used to generate the SciPy conference proceedings

repo containing all validations and benchmarking of minian

No description.

Project Pythia Cookbook template

A high-level plotting API for pandas, dask, xarray, and networkx built on HoloViews

Visualization-focused examples of using Python for specific topics

Build a tested, sphinx-based website from notebooks

A high-level app and dashboarding solution for Python

No description.

spectra of blood, water, and maybe some other fun things

The fastai book, published as Jupyter Notebooks

This is the repository for the distill web framework

No description.

A repo for the pre-course work at home exercises

Python package to track position, velocity, head direction from video for Loren Frank datasets

No description.

Summer course content for Neuromatch Academy

MountainSort pipeline for spike sorting.

No description.

review of neuroscience data analysis ecosystem

No description.

mirror from bitbucket

Classification of medial entorhinal units

A presentation on best coding/data management practices based on my own experiences of scientific computing and data analysis and heavily borrowing from the recommendations of many others. View presentation at: https://edeno.github.io/Better-Science-Code

Awesome generative art

Python tools for reading in data from Loren Frank's lab

No description.

Files related to the ultracortex, the OpenBCI 3D-printable EEG headset currently under development

State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016

Frequency domain functional and directed connectivity analysis tools for electrophysiological data

Code for analysis on data from Jadhav et al. 2016

Grid cell data analysis package.

This repository contains the Matlab code for "Extracting grid characteristics from spatially distributed place cell inputs using non-negative PCA" by Yedidyah Dordek, Daniel Soudry, Ron Meir and Dori Derdikman

Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.