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Hi there, this is Mackenzie! 👋 I am a Prof. at EPFL leading a research lab that studies adaptive intelligence. What is that? Check out my prespective piece here. My…
Hi there, this is Mackenzie! 👋
I am a Prof. at EPFL leading a research lab that studies adaptive intelligence. What is that? Check out my prespective piece here. My handle reflects some historical use of GitHub before Orgs 👀 where I used to host all lab repos, but now most are under our Org ➡️ here.
Below is a collection of projects I contribute to, with a few highlights being:
Thanks for visiting!
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DeepLabCut ★ PINNED ⑂
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Python ★ 0 9mo agoExplain → -
CEBRA ★ PINNED ⑂
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
★ 0 1y agoExplain → -
DLC2Kinematics ★ PINNED ⑂
a module for kinematic analysis of deeplabcut outputs
Python ★ 0 4y agoExplain → -
CellSeg3d ★ PINNED ⑂
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training, inference, and review of masks
Jupyter Notebook ★ 0 1y agoExplain → -
MotionMapper ⑂
Sample implementation of the MotionMapper behavioral analysis algorithms
MATLAB ★ 9 7y agoExplain → -
FreelyMovingVR4Mice
code base for running DeepLabCut, unity3D, and task control with a teensy
Jupyter Notebook ★ 5 18h agoExplain → -
EPFL_TenurePacket_latexTemplate
No description.
BibTeX Style ★ 5 1y agoExplain → -
Nx-435_EPFL
No description.
Jupyter Notebook ★ 5 4mo agoExplain → -
MotorLearningModel
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
Python ★ 3 2y agoExplain → -
DeepLabCut-Workshop-Materials ⑂
Workshop material for using DeepLabCut
Jupyter Notebook ★ 2 2y agoExplain → -
CEBRA-demos ⑂
CEBRA Demo Notebooks. Please see all of them at the URL below:
Jupyter Notebook ★ 1 1y agoExplain → -
awesome-neural-geometry ⑂
A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
★ 1 2y agoExplain → -
keypoint-moseq ⑂
No description.
Python ★ 1 3y agoExplain → -
AcinoSet
A repository to reconstruct cheetahs into 3D from videos
★ 1 5y agoExplain → -
scanreader ⑂
Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
Python ★ 1 3y agoExplain → -
py-ic-imaging-control ⑂
Python wrapper for the IC Imaging Control SDK from The Imaging Source (TIS)
Python ★ 1 7y agoExplain → -
t-SNE ⑂
A Jupyter Notebook to explore the t-SNE visualization algorithm on a toy data set.
Jupyter Notebook ★ 1 10y agoExplain → -
Coloring-t-SNE ⑂
Exploration of methods for coloring t-SNE.
Jupyter Notebook ★ 1 9y agoExplain → -
models ⑂
Models built with TensorFlow
Python ★ 1 9y agoExplain → -
MMathisLab
No description.
★ 0 5mo agoExplain → -
llavaction
No description.
JavaScript ★ 0 5mo agoExplain → -
AROS ⑂
💍
Jupyter Notebook ★ 0 1y agoExplain → -
odeformer ⑂
No description.
Jupyter Notebook ★ 0 1y agoExplain → -
LINdoscope2023 ⑂
Notebooks and code for the 2023 EMBO course on imaging and data analysis
Jupyter Notebook ★ 0 2y agoExplain → -
openscope_databook ⑂
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
★ 0 2y agoExplain → -
BUCTD
Official Open Source code for "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
★ 0 3y agoExplain → -
awesome-ai-residency ⑂
List of AI Residency Programs
★ 0 3y agoExplain → -
DataJoint_Demo_DeepLabCut
No description.
Python ★ 0 4y agoExplain → -
deepgraphpose ⑂
DeepGraphPose
★ 0 4y agoExplain → -
DeepLabCut_maDLC_DemoData ⑂
Example DeepLabCut projects
Jupyter Notebook ★ 0 5y agoExplain → -
swiftascmaps ⑂
Taylor Swift-inspired color maps
★ 0 5y agoExplain → -
DeepLabCut-live-GUI ⑂
GUI to run DeepLabCut on live video feed
★ 0 5y agoExplain → -
DeepLabCut-cookbook ⑂
Scipy Cookbook
★ 0 5y agoExplain → -
VAME ⑂
Variational Animal Motion Embedding
Python ★ 0 5y agoExplain → -
DeepLabCut-core ⑂
Headless DeepLabCut (no GUI support)
Python ★ 0 5y agoExplain → -
CarND-Camera-Calibration ⑂
Images and notebook for camera calibration
Jupyter Notebook ★ 0 8y agoExplain → -
Docker4DeepLabCut2.0 ⑂
Docker container for running DeepLabCut2.0 (linux support only)
Jupyter Notebook ★ 0 6y agoExplain → -
deeplabcut-1 ⑂
A Bonsai interface for real-time markerless pose estimation using DeepLabCut
★ 0 6y agoExplain → -
DLCutils ⑂
Various scripts to support deeplabcut...
Jupyter Notebook ★ 0 6y agoExplain → -
CaImAn ⑂
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Jupyter Notebook ★ 0 9y agoExplain → -
stylize-datasets ⑂
A script that applies the AdaIN style transfer method to arbitrary datasets
Python ★ 0 7y agoExplain → -
datajoint-python ⑂
Relational data pipelines for the science lab
Python ★ 0 7y agoExplain → -
mesoscope ⑂
No description.
Jupyter Notebook ★ 0 9y agoExplain → -
docker ⑂
Information and scripts to run and develop the Bethge Lab Docker containers
Makefile ★ 0 8y agoExplain → -
PyDAQmx ⑂
Interface to National Instrument NIDAQmx driver
Python ★ 0 8y agoExplain → -
pseyepy ⑂
PSEye-py: a python interface to the PS3Eye camera
C ★ 0 8y agoExplain → -
pipeline ⑂
Schemata and libraries for neuroscientific data
Matlab ★ 0 8y agoExplain → -
commons ⑂
DataJoint schemas for neuroscience data
Matlab ★ 0 8y agoExplain → -
deepschool.io ⑂
Deep Learning tutorials in jupyter notebooks.
Jupyter Notebook ★ 0 8y agoExplain → -
ClearMap ⑂
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
Python ★ 0 9y agoExplain → -
gspread ⑂
Google Spreadsheets Python API
Python ★ 0 9y agoExplain → -
spykesML ⑂
A class for using ML algorithms for spike prediction
Jupyter Notebook ★ 0 9y agoExplain → -
Spikefinder-Elephant ⑂
Keras network for spike detection from calcium traces
Jupyter Notebook ★ 0 9y agoExplain → -
nbconvert ⑂
Jupyter Notebook Conversion
Jupyter Notebook ★ 0 9y agoExplain → -
twpca ⑂
🕝 Time-warped principal components analysis (twPCA)
Jupyter Notebook ★ 0 9y agoExplain → -
FinchScope ⑂
Single photon tools for Neuroscience
Matlab ★ 0 9y agoExplain →
No repos match these filters.