Nicolas P. Rougier

An open access book on scientific visualization using python and matplotlib

A free, open-access book and code repository teaching researchers and students how to create publication-quality scientific figures using Python and Matplotlib, covering layout, color, 3D figures, and animation.

An open-access book on numpy vectorization techniques, Nicolas P. Rougier, 2017

A collection of stand-alone Python machine learning recipes

GNU Emacs / N Λ N O - Emacs made simple

An open access book on Python, OpenGL and Scientific Visualization, Nicolas P. Rougier, 2018

Experimental 3D axis for matplotlib

100 numpy exercises (with solutions)

A collection of 100 hands-on NumPy exercises with solutions for practicing numerical computing in Python, useful as a self-study course, a quick reference, or ready-made classroom material.

Matplotlib tutorial for beginner

Matplotlib 3.1 cheat sheet.

OpenGL text using one vertex buffer, one texture and FreeType

A very minimal but elegant emacs (I think)

C++ Crash Course

GNU Emacs notebook mode

A minor mode for Emacs that replace keywords with nice SVG labels

Get Things Done with Emacs

Numpy beginner tutorial

A dashboard for mu4e (mu for emacs)

GNU Emacs / N Λ N O Theme

Emacs SVG libraries for creatings tags, icons and bars

Python binding for the freetype library

A clean interface for org files (Emacs)

Ten simple rules for better figures

Litterate configuration for GNU Emacs

GNU Emacs / N Λ N O Modeline

Braincraft challenge — 1000 neurons, 100 seconds, 10 runs, 2 choices, no reward

A tiny sotfware 3D renderer in 100 lines of Python

Artificial Neural Networks / Python

Org agenda in the console

Functions for folding threads in mu4e headers view

An Emacs minor mode for literate & annotated bibliography

Emacs package to have configurable sidebars on a per frame basis.

Material for a 24 hours course on Scientific Python

Adaptation of Jake VanderPlas graphic about python visualization landscape

Outdent headlines in emacs org-mode

Emacs notes list

Calendar heatmap with matplotlib and random data

Emacs side frames

An alternative calendar for Emacs

An emacs library to create SVG icons on the fly

Emac native dialog box

A minimal org agenda for Emacs

OpenGL Antigrain Geometry experiments

Emacs configuration file for elfeed (news reader)

Box around buffers in GNU Emacs (graphics or terminal mode)

Streamlines animation (matplotlib)

An alternative splash screen for GNU Emacs

This is the material for the URFIST course on Git & GitHub. Bordeaux, March 27 & 28, 2018.

Recursive voronoi diagram

Computational Neuroscience Crash Course (University of Bordeaux, 2020)

Plain text agenda

Emacs / nano + vertico

50 Frequently Asked question about Git & GitHub

Emacs alternative mastodon layout

3D files for printing baby GNU and Tux

Material for dataviz course at university of Bordeaux

Exended profile

Remake of necessary disorrder beautiful animation

Gallery of matplotlib samples

Some people that facilitate science, one way or the other

Minibuffer header for GNU/Emacs

Persistent identifier library for GNU Emacs

Python bindings for GLFW 3.0

A collection of scientific posters (with sources) made with Pages or ComicLife

A pledge for reviewers

Get DOI from PDF files dropped onto a Emacs buffer

Emacs toolbar in the header line

Fast, scalable & beautiful scientific visualisation

An outer indentation org mode

org-mode side menu with filtering capability

Computational Neurosciences repository

A cleaner and less cluttered style for emacs

Emacs package for formatting relative dates (dates difference)

A collection of conferences posters (with sources) made with Pages

Computational Neuroscience Crash Course (CNCC 2019)

A helper library to create mode-line for GNU Emacs

Material for dataviz course (Nancy, 2023)

Randomize Self Organizing map

Matplotlib animation from the Unknown Pleasures album cover (Joy Division)

Material for the dataviz courses, Bordeaux

A set of tools for emacs that are not worth to be packaged.

Octicons glyph name for emacs

GL Mathematics for Numpy

Dynamic Self-Organized maps

Visual bell for GNU Emacs

Spatial computation

Course taught at the University of Bordeaux in the academic year 2015/16 for PhD students.

Notes for the Scientific Python course at the university of Bordeaux

A remake of the animation by Dark Horse Analytics (http://www.darkhorseanalytics.com)

Animated double pendulum using matplotlib

Restructured Text Bootstrap

Minibuffer for NΛNO Emacs

Alternartive read functions for GNU Emacs

Course taught at the University of Bordeaux in the academic year 2017 for PhD students.

N Λ N O Splash

Emacs / Quick command in the mode-line or header-line

Anatomy of a matplotlib figure

Mark conflicting items in the org-agenda

Alternative layour for mu4e

Lecture notes (Université de Bordeaux)

Defaults setting for vanilla emacs

Thread folding support for mu4e

Spiral galaxy simulator using the density wave theory

My GitHub blog

Material for the Advanced Scientific Python Programming course, Nikiti, Greece, 2017

mu4e thread folding

Distributed (Asynchronous) Numerical Adaptive computing framework

Poster for the Emacs conference 2022

Python conversion of some D3 modules (https://github.com/d3) [WIP]

Lecture notes for the "Programming with Python" course I have taught in Spring 2015. at The University of Manchester

See https://youtube-dl.org/

Emacs Mastodon org links and dashboard

Minimalist LaTeX template for academic papers

Re-run, Repeat, Reproduce, Replicate, Re-use

Code for http://jcgt.org/published/0002/02/08/

A raycasted maze using numpy (raycast) and matplotlib (display).

Code for "A density-driven method for the placement of biological cells over two-dimensional manifolds"

Python glsl parser (partial)

Basal ganglia model

Homepage at http://www.labri.fr/perso/nrougier/

Ten Simples Rules for Scientific Fraud and Misconduct

Neural field with finite transmission speed

Personal bibliography

Material for La Rochelle Scientific Python conferenre (2017)

Notes used to give tutorials at Euroscipy conference

Display org properties in the agenda buffer.

Ten Years Reproducibility Challenge - Entry 1

Anti-Grain Geometry (version 2.4)

Textured mesh using matplotlib

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OpenGL history document

Computational Neuroscience Course / Bordeaux 2019

Adds SciHub links to popular publisher websites

Main repository for Vispy

Dummy template book for the URFIST course (Bordeaux, 2018)

Image Processing SciKit (Toolbox for SciPy)

Typed list based on numpy array

Emacs Plus formulae for the Homebrew package manager

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A tutorial on neuroinformatics resources for computational modellers

Simple bot simulator

Evopropsect scripts

A simple script I use to send commands from emacs to iTerm2 on Mac OS X

MEMory STIMulation using Hodgkin-Huxley neurons

2D GPU renderer for dynamic UIs

Exercise repository

Matplotlib blog

Code for http://jcgt.org/published/0002/01/04/

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Code for http://jcgt.org/published/0003/04/01/

Nicolas P. Rougier homepage

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scikit-learn: machine learning in Python

ReRun, Repeat, Reproduce, Reuse, Replicate

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The population dynamics of vertical and horizontal transmission allow for the study of the evolution of virulence. Here, we replicate a model by Lipsitch et al. (1996) analyzing the trade-offs between both types by modeling population dynamics between 1 host population and 100 pathogen strains added individually every 1,000 timesteps.

Reaction diffusion simulation using GPU/pyglet

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, python3 support, etc.

Minimal, clean example of lstm neural network training in python, for learning purposes.

ReScience website sources

Sources for LinuxMag 2014 on Scientific Python

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Supporting material for the article "One critic, two actors"

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ReScience submission template repository

Dual pathway architecture underlying vocal learning in songbirds

Emacs plugin to show the current buffer's imenu entries in a separate buffer

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Implement fractal dimension analysis for grayscale images, micsrocopy images and biological application following FIJI/ImageJ.

This is the source code of the 2021 replication for ReScience of the paper "Speedup Graph Processing by Graph Ordering" by Hao Wei, Jeffrey Xu Yu, Can Lu, and Xuemin Lin, published in Proceedings of SIGMOD 2016.

A Python/Numpy implementation of Hierarchical Temporal Memory (WIP)

This repository contains code, data, and a manuscript implementing and describing the replication of two publications that apply ordinal regression models to insect phenology data.

Deft for Emacs

Vers une recherche reproductible : faire évoluer ses pratiques

Spatialisation of Reservoir computing networks for display purposes.

Cleanup test (large files removal) for memstim-hh

Paper for RRPR 2018

ReScience journal - current issue

Temporary repo for testing helpme

maildir indexer/searcher + emacs mail client + guile bindings

Gosling emacs from early 1980s

:desert_island: corfu.el - Completion Overlay Region FUnction

Emacs mac port formulae for the Homebrew package manager

Powerline for Emacs

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AGG Anti-Grain Geometry Library

GLyphy is a signed-distance-field (SDF) text renderer using OpenGL ES2 shading language.

Simple tasks for testing the basal ganglia model from Topalidou et al. (2015).

Hugo documentation theme as simple as plain book

A simple and flexible code for Reservoir Computing architectures like Echo State Networks

Lesson repository example

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ReScience C submissions

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SVG icons for popular brands

Website for the 512 KB Club

⚡ High-performance GPU interactive scientific data visualization with Vulkan

Echo State Network model source code for the replication in ReScience (LINK) of "A Neurodynamical Model for Working Memory" by Razvan Pascanu and Herbert Jaeger.

This repository contains code and a manuscript implementing and describing the replication of two publications on search-and-matching models.

https://github.com/ReScience/ten-years