Umut Eser Claim this profile

Flexible Integration of Data with Deep LEarning

Towards Genuine AI Understanding

Set of scripts useful for TSS detection and genome annotation

An SDK for building and training Emergent Models

Using helper networks to estimate complicated loss functions

emergent model with 4-states, neighborhood of 3. Code for training and inference.

Codes used for analysis in the following paper: "Form and function of topologically associating genomic domains in budding yeast."

No description.

No description.

No description.

No description.

No description.

Notus NextJS: Free Tailwind CSS UI Kit and Admin

Simple template to build API's with Flask, Flask-RESTful and Flask-RESTful-Swagger

No description.

A Translator ARA combining asynchronous database querying, answer coalescence, and answer ranking.

Python package built to ease deep learning on graph, on top of existing DL frameworks.

No description.

small pieces of codes that I often use

Computaional Biology and Learning Algorithms

Toy project that allows me to listen to custom playlists

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Customized fastq alignment pipeline for Orchestra (Harvard Medical School's LSF based clusters)

A curated list of awesome deep learning applications in the field of computational biology

Quick short analysis of Mass Spectrometry data

An algorithm that presents a different way of analyzing genomic signals

Trains an SVM with weakly annotated signal data and aligns them to improve annotation.

A Python implementation of CSSR for epsilon-transducers.

Tools for NET-seq data analysis

Detects the Pol2 pausing during transcriptional elongation

Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.