Vanessa Sochat

A Jekyll version of the beautiful Docsy!

open a pull request when a branch is pushed or updated

The Material theme from MkDocs provided as a Jekyll template, optimized for GitHub Pages

Reproducible watchers for research

example of using nginx upload module with Django!

ascii database of pokemon... in python!

Python implementation of Open Containers Initiative (OCI) specifications

Docker compose to bring up Open OnDemand with SLURM, Centos 7

brain image comparison and visualization methods for python!

open source, collaborative art generation that combines hand and machine

a container to convert swf files to mp4 (video)

Django plugin for online machine learning with river (under-development)

Hi, I'm Vanessa (vsoch, the Vanessasaurus) and this is where I write things.

version controlled knowledge base for documentation and support

examples of using Singularity containers for web-based products

a search interface for any user account or organization

An interactive script to export a Google Group

Python module for easy creation of nushell plugins

A dataset to extract container metadata from Github Dockerfiles (under development)

A docker container to run the beloved asciiquarium. Because you can't kill these fish.

data visualization for code (experimental project)

Melodic + Dual Regression Package in Python

testing implementation of Cognitive Atlas as neo4j served with docker, for some application

open source datasets for machine learning, the dinosaur datasets

Find plagarism in text via a Google Search. You will need to tweak the input file to your specific format.

Client and GitHub action to keep repository contents up to date (currently support for Docker)

A Docker base for running Orthanc for the School of Medicine

create a mosaic of brain images to match any image template

A small script to convert MediaWiki (restructured syntax?) content to markdown.

Using repofish and wordfish together to understand methods in Microsoft publications makes a... microfish!

A toolbox to find if gene sets and drugs are meaningfully related [in development]

Testing converting an owl file to neo4j graph, for visualization purposes

collection of command line tools for working with Singularity and Docker

python api wrapper for the ohbm conference

web application to serve (simple) singularity images

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A django application to demo a bone age prediction model

I got distracted 10 hours ago, and this is what happened.

An interface for exploring brain functional connectivity data

NIDM Results Viewer

dinosaur dataset to help understand domain-specific software

GitHub Action to validate Zenodo JSON Metadata Files. 🛡️

Playing around with parsing binaries / DWARF with Go

Module for neuroimaging data manipulation and sample applications

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reproducible pipeline to go along with work for semantic-image-comparison

A base framework for applications that use the Stanford School of Medicine APIs

the dinosaur data container for interaction with dinosaur data datasets!

migration of docker --> docker-compose --> kubernetes for epad @ Stanford

a playground for visualizing and working with nifti images without a server

font symbols for brain imaging analyses

use the kaggle api to create and upload a dataset (example!)

a template scientific filesystem with RNA seq tools, as an example for development

trying to build qt-creator into a Docker container for easy usage.

learning to use Processing (Java) with Python to generate... generative art!

developing interactive body visualization

A quick matlab demo of signal processing

Gene set enrichment analysis file preparation, and submission scripts to run with gsea .jar on Sherlock

image-based image search in python

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gbmatlas website from gbmatlas.stanford.edu

Version 2 of Cognitive Atlas visualization to show concepts associated with brain region voxels

Dockerized prostate cancer re-ocurrence and survival prediction app

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parse library of congress images for faces, extract emotions from faces, make nice database :)

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in loving memory of neurostars, there is still hope, but in case not, I found some of your remnants

a toy example of using singularity and singularity python to compare operating systems and software

butterfly server packaged in singularity container

a django application for real time collaborative survey taking

example data file / hierarchy for import / export of images and text from Wordfish

testing an enzo simulation with MPI, enzo, and Singularity

python api wrapper for uservoice client for Stanford Research Computing

Journal of Open Source Containers

Dockerized rstudio with some statistics and neuro packages!

simple container with R wrapper for Keras neural network library

run the parse pileup perl script using Docker

pipeline documentation development for ENCODE-DCC (under development)

Fluxion Graph-based Scheduler

interactive plot and table to track daily output of JP-Drain as compared to a benchmark

Cluster to run on GCE for Cosmos and Genomekey

Preprocessing module functions for nextbio output files

Functions to select, read, and filter connectivity map (cmap) data instances, for input into a GSEA analysis

Gut Microbiome Mapping

Vanessa's vcf tools for simple working with variant call format files

discover genetic signature of behavior informed by neuroimaging

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A simple mapping of the neurosynth database terms to the cognitive atlas

Methods for analysis of Duke NeuroGenetics Study data - goal is to make connections between behavior and genes!

Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.

Enrichment of disorders in Allen Brain Atlas

d3 Network work for the myconnectome project

Enrichment of disorders in brainspan Developmental data

Simplified version of myconnectome d3 visualization

predict "important" time periods for a list of gene probes based on RNA-seq expression

The Chunk Indifferent Ranking Algorithm for scoring accuracy of grouped ranked list

Task fMRI Project

cloud infrastructure for evaluating image comparison methods

Decoding of fMRI contrasts using neurovault images tagged with terms from the Cognitive Atlas

virtual machine deployment of CogatPheno application

Rserver to run on some VM to provide programmatic access to R functions and plotting

should have bought a pc...

design an event or block related experiment in the browser

a launcher module for slurm jobs on the TACC wrangler cluster

deepdive + neurosynth for inference

Testing viewing of NIDM-Results with Neo4j Graph

prostate cancer re-ocurrence and survival prediction app for shinyapps.io

testing Polymer and material design... web components ftw!

testing generating data points with canvas on a map (should be extendable to brain images!)

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polymer element for working with nifti in the browser

Happy Holidays 2015 :)

my current favorite song :)

Create interactive svg of brain map segmentation

image-based meta analysis for neuroimaging

a demo of a material design experiment (with material design light components)

perform reverse inference for a query image against NeuroVault images tagged with Cognitive Atlas concepts

web interface to view images from neurovault tagged with cognitive atlas concepts

continuous integration to deploy updated version of cognitive atlas concept tree and neurovault images tagged to it

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testing electron app for Cognitive Atlas #noob

visualizations generated with continuous integration (visci)

Got art on the brain?

visualizations generated with continuous integration (visci)

The web interface for the authorSynth collaboration tool

interactive confusion matrix with flask and d3

web-based image viewer for local brain images

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nidm-api report for brainhack submission to gigascience

supplementary files and (eventually) web rendering of my graduate thesis

parse william james paragraphs (for later topic modeling) and finding cognitive atlas terms

jspoop (js parsed out of pages) will generate a standard data structure to describe javascript libraries [UNDER DEVELOPMENT]

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voxelwise visualization (interactive Flask application) for Cognitive Atlas decoding model

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playing around with nodejs

learning spark with python

tools for generating components for interactive visualizations, from data and images

a simple app to demonstrate using level money api to show balances (spent and income)

messing around with learning React.js

word cloud to show cognitive concepts associated with voxelwise encoding models

catch me if you can! nomnom

desktop application for the Experiment Factory (under development)

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testing singularity, learning singularity, run containers without sudo awesome!!

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testing service workers

use service-worker to save temporary images, style sheets and scripts, and links

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general visualization and comparison metrics for containers

quality improvement in R example for Jane

having some fun, learning simple C

The years may pass, as you know where they went, you'll never know bouts of sad, joy, or glory you are never too old for a story! Happy Birthday, I do wish. to my most favorite of fish.

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the journey, of what Gil eats

can we create a static, web-based, client side REST API (and database)?

testing deploying miniconda3 with Docker for registry-1.docker.io

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when is Gilfish coming home?

My website

I don't even know.

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just a little fun to run on a cluster :)

Exploring the official french's drug database

Generate smiley confusion matrices. Under development!

library of official expfactory experiments

annotation and markup of text and images for Stanford University

the cookies dataset is an example dataset that shows turning a static repository into a JSON API standardized resources for images and text

testing running clair with a singularity image

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testing container for pushing to singularity-hub

Singularity container with nbconvert for conversion of jupyter notebooks to other formats

Testing Golang app

web things for brother

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experiment robots for testing and previewing container experiments

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mmmm

containers and instructions for running interactive notebooks via job submission (slurm)

simple login wrapper for token entry to web applications

This is a repository for Singularity container base OS images

historical NKG Gallery Website (2012) for archive

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plotting 150K values from a brain image using canvas

vanilla CI to build a Docker image and deploy to Docker Hub

a container with jekyll and git

more dinosaur learning fun!

cookiecutter template for encode pipeline (testing)

a cookiecutter template for a repo2docker continuous build repository

I have decided I will take bike trips, because there is no better time. 🚴‍♀️

Small set of games.

Kubeflow Website

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High Performance Software Foundation TAC

Bon voyage! ✈️